The patent sequence database GENESEQ, produced by Clarivate and providing coverage of nucleic acid and protein sequences extracted from the original (basic) patent documents published by 57 patent offices worldwide, has been reloaded and enhanced. The database was previously known as DGENE on STNext.
Many of the enhancements documented herein have already been Implemented in PATGENE, earlier in 4Q2021. USGENE is expected to be updated similarly in 2Q2022.
Highlights of the new version of the GENESEQ database are:
New BLAST version and additional BLAST search options
New FASTA version
Improved usability of Motif searching (RUN GETSEQ) results
Better display of search results
New search fields for the composition of nucleic acid and
protein sequences
Better compatibility with PATGENE and USGENE databases
Better compatibility with full text patent databases
Improved performance, and additional enhancements
NEW BLAST VERSION AND ADDITIONAL BLAST SEARCH OPTIONS
GENESEQ now uses BLAST version 2.12.0. Four additional search options have been introduced:
/SQM - the megaBLAST algorithm, for searching highly similar nucleotide sequences
/SQDM - the discontiguous megaBLAST algorithm, for searching similar nucleotide sequences but allowing more mismatches
/TSQP - the BLASTx algorithm, for searching nucleotide sequences translated from PATGENE protein sequences
/TSQNX - the tBLASTx algorithm, for searching translated nucleotides from PATGENE protein sequences
Additional details on these new search options can be found by typing HELP BLAST or HELP TLATION at an arrow prompt while in GENESEQ.
NEW FASTA VERSION
The FASTA algorithm, invoked by RUN GETSIM, has been updated to version 36.3.8h. It now allows searching of sequences up to 30K characters in length. The available search options are the same as before: /SQN for searching nucleotides sequences, /SQP for searching amino acid sequences, and /TSQP translating a nucleotide query in all six reading frames to an amino acid sequence and searching in the
protein sequences. The display of the parameters, the overview diagram and the alignments are now the same for GETSIM and BLAST searches. Updated HELP information is available in HELP GSIM.
IMPROVED USABILITY OF MOTIF SEARCHING (RUN GETSEQ) RESULTS
To improve the usability of Motif searching results, the entire answer set is now always included within a single L number. HELP GSEQ has been updated and includes additional information.
BETTER DISPLAY OF SEARCH RESULTS
New displays of similarity results are now available. For each BLAST or GETSIM search two diagrams are generated to provide an overview of the similarity between the retrieved sequences and the query:
the number of answers, and
a score for the specific degree of similarity for this search
For BLAST and GETSIM searches, L-numbers are each generated by entering ALL, a percentage or an absolute number. Each L-number can be used for further processing.
Alignments can be displayed for all three RUN options (BLAST, GETSIM, GETSEQ) as text with the display format ALIGN or as an image with ALIGNG.
NEW SEARCH FIELDS FOR THE COMPOSITION OF NUCLEIC ACID AND PROTEIN SEQUENCES
Need to find sequences with a particular type of content? The introduction of new search fields reporting the nucleotide and amino acid composition of specific sequence makes this possible. The new fields are as follows:
/AA - retrieves amino acid codes expressed as single characters (see HELP AAC for the definitions of the amino acid codes)
/NA - retrieves the nucleotide codes (see HELP NUC)
/AA.CNT - retrieves the number of amino acids
/NA.CNT - retrieves the number of nucleotides
/AA.PER - retrieves the percentage of amino acids in the sequence
/NA.PER - retrieves the percentage of nucleotides in the sequence
Range searching is possible for the /AA.CNT, /NA.CNT, /AA.PER, and /NA.PER fields, and the use of (S) proximity provides precision searching capabilities. For example, nucleotides with high GC-content (Guanine, Cytosine) can be retrieved with: => S (G OR C)/NA (S) 60-100/NA.PER
BETTER COMPATIBILITY WITH THE PATGENE AND USGENE SEQUENCE DATABASES
The search fields Patent Sequence Location (/PSL) and Sequence Count (/SEQC), already available in PATGENE and USGENE, are now also available in GENESEQ. This means that the same sequence-specific searches can now be performed in all three databases.
For every sequence in GENESEQ, the SHA-2 algorithm has been applied and indexed in the new field Sequence Key (/SEQK). The generated string (e.g., A0000030BD19782FC1774AF58E4CFFEE7F0E30588CBA14DCD38C), is specific to a sequence. Identical sequences receive the same string, regardless of the database of origin, or the organism from which the sequence was isolated. The /SEQK field has already been added to PATGENE and will be added to USGENE in due course to enable efficient duplicate identification.
COMPATIBILITY WITH FULL TEXT PATENT DATABASES
Additional search fields common to the patent full text databases are now also available in GENESEQ:
/APO Application Number, Original
/DED Data Entry Date
/DUPD Data Update Date
/PNO Publication Number, Original
/PRDF Priority Date, First
/PRYF Priority Year, First
/PRNO Priority Number, Original
These fields already appear in PATGENE and will also appear in USGENE in due course.
IMPROVED PERFORMANCE, AND ADDITIONAL ENHANCEMENTS
As a result of the new BLAST and FASTA versions, search performance is improved.
Although BATCH searches are not possible, L-numbers from sequence searches can be saved with the command SAVE and reactivated with ACTIVATE.
Alerts for sequences are not possible for the time being but can be set up for bibliographic fields.
The default maximum number of hits has been increased to 15,000. The new parameter -maxseq allows the maximum number of hits
Europe Stories
05/01/2027
Worlds first 802.15.4ab-UWB chip verified by Calterah and Rohde & Schwarz to be ...
09/10/2026
September 10 2026, 06:00 (PDT) Dolby Expands Dolby OptiView Platform with New Capabilities at IBC 2026
New Sports Intelligence helps providers better unders...
07/10/2026
Dalet, a leading technology and service provider for media-rich organizations, today announced the latest Long-Term Supported (LTS) release of Dalet Flex. Build...
06/10/2026
Three new compact pedals announced
Warm Audio have just introduced a new guitar pedal line-up that offers compact, pedalboard-friendly versions of some of t...
06/10/2026
Drum-replacement tool gets major overhaul
WaveMachine Labs have announced that the latest version of their drum-replacement software is now available, and i...
06/10/2026
Firmware update implements user-requested features
Arturia's stage-going keyboard series has just received a significant update that addresses some of t...
06/10/2026
(4:51 PM) Wiesbaden, October 06, 2026. Based on business performance to date, pa...
06/10/2026
Tuesday 6 October 2026
Official trailer released for The Good Daughter ahead of...
06/10/2026
Savanyu reports getting more gain from the sound system, which he credits to the capsules asymmetrical supercardioid pickup pattern.
Even with less-than-ideal...
06/10/2026
Andrew Trimble delves into the author's Belfast upbringing
Thursday, 8 Octo...
05/10/2026
New multi-pattern LDC revealed
Austrian Audio have announced the upcoming launch of a new multi-pattern large-diaphragm capacitor mic that occupies the midd...
05/10/2026
Software gains Tonex Board rig support
When IK Multimedia launched the Tonex Board, they mentioned that it would soon be followed by a significant update to...
05/10/2026
Offers a modern take on classic chorus effects
fedDSP's latest creation has been designed to offer a modern take on the classic chorus effect, combining...
05/10/2026
FOX Deepens Investment in the Creator Economy, Expanding Leadership Team to Acce...
05/10/2026
RT will provide comprehensive coverage and analysis of Budget 2027 across online, radio and television on Tuesday 6 October, with extensive reporting and analy...
04/10/2026
Dedicated streaming mic gets an overhaul
Following on from the success of their dedicated streaming microphone, the MV6, Shure have announced the launch of ...
02/10/2026
v1.9.3 introduces AUv3 support
Roland have just released an update that kits their free iPad-based software synth out with AUv3 support, meaning it can now ...
02/10/2026
Dolby Atmos support, AI-powered stem separation & more
The latest version of MOTU's DAW software is now available, and marks a major step forward with t...
02/10/2026
Portable DAC created in collaboration with Steve Levine
British hi-fi experts iFi audio have unveiled a new Master Tuned variant of their praised iDSD GR2 p...
02/10/2026
In our latest blog, Tim Pearson looks at streaming piracy from a different lens, focusing on digital trust, consumer risk, and the future of subscriber protecti...
02/10/2026
Featuring performances recorded in Cork, Kilkenny, Wesmeath and Dublin culminati...
02/10/2026
Friday 2 October 2026
Crystal Lake, a Friday the 13th' prequel series, com...
02/10/2026
Friday 2 October 2026
Sky VIP helps families celebrate the Christmas season wit...
02/10/2026
How the fertility sector in Ireland remains unregulated
Undercover filming reveals how without proper regulation the promotion of controversial fertility treat...
02/10/2026
Transforming Homes, Transforming Lives
Presenter Baz Ashmawy and his team take on four life-changing builds across Kildare, Limerick, Wicklow and Offaly in the...
01/10/2026
Third collaboration with celebrated composer
Spitfire Audio have once again teamed up with Grammy-nominated composer, producer and technologist BT, creating...
01/10/2026
FL Studio gets dedicated grid controller
Novation have teamed up with FL Studio developers Image-Line to create another dedicated controller for the popular...
01/10/2026
Six new USB interfaces introduced
Universal Audio's USB audio interface line-up has just been refreshed, gaining six new models aimed at musicians, prod...
01/10/2026
Siretta's SNYPER-5G cellular network analyser has been shortlisted for the IoT Global Awards 2026.
The IoT Global Awards recognise products, services and o...
01/10/2026
Mesh Broadcast Services Fits Big-Truck Audio Power into Compact Eclipse Unit with Calrec Argo M Canadian OB company Mesh Broadcast Services has fitted its Eclip...
01/10/2026
X-Rite Pantone Launches Spectura to Advance Connected Color Quality from Lab to ...
01/10/2026
Thursday 1 October 2026
Nominees revealed for 2026 Sky Arts Awards
Current slide, 0 0, undefined1
0
Irish National Opera and Jennifer Walshe: MARS
Jacob Al...
01/10/2026
Vital TV antenna replaced at SudburyHelicopter and broadcast engineers work together to upgrade TV services for 1.5M in the East
--
Share to Linkedin
Octobe...
01/10/2026
Arqiva appoints Simon Duffy as ChairSimon Duffy joins as Chair effective 01 October 2026
--
Share to Linkedin
October 1, 2026
Press Office
01 October 2026...
01/10/2026
Season 4 of the multi-award-winning hit entertainment series The 2 Johnnies Late Night Lock In is back, serving up another round of unpredictable laughs, unforg...
01/10/2026
New season begins Sunday, 4 October at 6pm on RT lyric fm and RT Listen
RT lyric fm's arts and culture documentary series The Lyric Feature returns on S...
01/10/2026
RT is proud to continue its commitment to supporting and celebrating the arts across Ireland this October, highlighting a vibrant programme of theatre, music, ...
30/09/2026
Add an envelope generator to any plug-in
Sync Audio's latest creation is a handy utility plug-in that can be used to combine and modulate other effects ...
30/09/2026
All-analogue tape-style drive joins Series A
Strymon's reputation was built on their digital knowhow, so many were surprised (and intrigued) when they a...
30/09/2026
Two new expansion packs released
Sonuscore have just introduced two new expansion packs for The Pulse, its production engine instrument for modern cinematic...
30/09/2026
eds3_5_jq(document).ready(function($) { $(#eds_sliderM519).chameleonSlider_2_1({...
30/09/2026
Luxembourg, September 30, 2026 - SES and Sky have extended their long-standing partnership in a new multi-year agreement for direct-to-home (DTH) satellite serv...
30/09/2026
New Solution Expands Harmonic's Network Intelligence Portfolio and Brings Comcast-Developed Fiber Monitoring Technology to Broadband Operators, Providing Re...
30/09/2026
How to Shop Well Now starts Monday at 9.35pm
on RT One and RT Player
On the...
29/09/2026
Two new plug-ins launch alongside updated bundles
Zynaptiq have just announced the launch of two new plug-ins, alongside new and improved versions of two of...
29/09/2026
All-in-one bus processor revealed
Wes Audio's ng product range has come a long way since it was first introduced, and now includes a tasty selection of ...
29/09/2026
eds3_5_jq(document).ready(function($) { $(#eds_sliderM519).chameleonSlider_2_1({ content_source:......
29/09/2026
CMA Imaging, Sun Chemical, and X-Rite Pantone Help Brands Accelerate Metal Packa...
29/09/2026
NOT FOR RELEASE, PUBLICATION OR DISTRIBUTION IN OR INTO OR TO ANY PERSON LOCATED OR RESIDENT IN, OR AT ANY ADDRESS IN, THE UNITED STATES OF AMERICA, ITS TERRITO...
The patent sequence database GENESEQ, produced by Clarivate and providing coverage of nucleic acid and protein sequences extracted from the original (basic) patent documents published by 57 patent offices worldwide, has been reloaded and enhanced. The database was previously known as DGENE on STNext.
